Jafarnejad et al. 2018 (PRJNA421497)

General Details

Title Translational control of ERK signalling pathway by the mRNA cap-binding protein 4EHP
Organism
Number of Samples 4
Release Date 2017/12/07 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP126348
ENA SRP126348
GEO GSE107826
BioProject PRJNA421497

Publication

Title
Authors Jafarnejad SM,Chapat C,Matta-Camacho E,Gelbart IA,Hesketh GG,Arguello M,Garzia A,Kim SH,Attig J,Shapiro M,Morita M,Khoutorsky A,Alain T,Gkogkas CG,Stern-Ginossar N,Tuschl T,Gingras AC,Duchaine TF,Sonenberg N
Journal eLife
Publication Date 2018 Feb 7
Abstract MicroRNAs (miRNAs) exert a broad influence over gene expression by directing effector activities that impinge on translation and stability of mRNAs. We recently discovered that the cap-binding protein 4EHP is a key component of the mammalian miRNA-Induced Silencing Complex (miRISC), which mediates gene silencing. However, little is known about the mRNA repertoire that is controlled by the 4EHP/miRNA mechanism or its biological importance. Here, using ribosome profiling, we identify a subset of mRNAs that are translationally controlled by 4EHP. We show that the Dusp6 mRNA, which encodes an ERK1/2 phosphatase, is translationally repressed by 4EHP and a specific miRNA, miR-145. This promotes ERK1/2 phosphorylation, resulting in augmented cell growth and reduced apoptosis. Our findings thus empirically define the integral role of translational repression in miRNA-induced gene silencing and reveal a critical function for this process in the control of the ERK signaling cascade in mammalian cells. © 2018, Jafarnejad et al.
PMC PMC5819943
PMID 29412140
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR6359213 PRJNA421497 Mus musculus Fibroblast Ribo-Seq
SRR6359214 PRJNA421497 Mus musculus Fibroblast Ribo-Seq
SRR6359217 PRJNA421497 Mus musculus Fibroblast Ribo-Seq
SRR6359218 PRJNA421497 Mus musculus Fibroblast Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About