Tsvetkov et al. 2020 (PRJNA644594)

General Details

Title Persistent activation of mRNA translation by transient Hsp90 inhibition
Organism
Number of Samples 6
Release Date 2020/07/07 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP270667
ENA SRP270667
GEO
BioProject PRJNA644594

Publication

Title
Authors Tsvetkov P,Eisen TJ,Heinrich SU,Brune Z,Hallacli E,Newby GA,Kayatekin C,Pincus D,Lindquist S
Journal Cell reports
Publication Date 2020 Aug 11
Abstract The heat shock protein 90 (Hsp90) chaperone functions as a protein-folding buffer and plays a role promoting the evolution of new heritable traits. To better understand how Hsp90 can affect mRNA translation, we screen more than 1,600 factors involved in mRNA regulation for physical interactions with Hsp90 in human cells. The mRNA binding protein CPEB2 strongly binds Hsp90 via its prion domain. In a yeast model, transient inhibition of Hsp90 results in persistent activation of a CPEB translation reporter even in the absence of exogenous CPEB that persists for 30 generations after the inhibitor is removed. Ribosomal profiling reveals that some endogenous yeast mRNAs, including HAC1, show a persistent change in translation efficiency following transient Hsp90 inhibition. Thus, transient loss of Hsp90 function can promote a nongenetic inheritance of a translational state affecting specific mRNAs, introducing a mechanism by which Hsp90 can promote phenotypic variation. Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.
PMC PMC10088179
PMID 32783929
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR12164922 PRJNA644594 Saccharomyces cerevisiae Ribo-Seq untreated
SRR12164924 PRJNA644594 Saccharomyces cerevisiae Ribo-Seq untreated
SRR12164926 PRJNA644594 Saccharomyces cerevisiae Ribo-Seq untreated
SRR12164928 PRJNA644594 Saccharomyces cerevisiae Ribo-Seq
SRR12164930 PRJNA644594 Saccharomyces cerevisiae Ribo-Seq
SRR12164932 PRJNA644594 Saccharomyces cerevisiae Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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