Ichihara et al. 2021 (PRJNA729461)
General Details
| Title | Combinatorial analyis of translation dynamics reveals eIF2 dependence of translation initiation at near-cognate codons |
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| Organism | |
| Number of Samples | 38 |
| Release Date | 2021/05/12 00:00 |
| Sequencing Types | |
| Protocol Details |
Study Links
| GWIPS-viz | Trips-Viz |
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Repository Details
| SRA | SRP319472 |
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| ENA | SRP319472 |
| GEO | GSE174329 |
| BioProject | PRJNA729461 |
Publication
| Title | |
|---|---|
| Authors | Ichihara K,Matsumoto A,Nishida H,Kito Y,Shimizu H,Shichino Y,Iwasaki S,Imami K,Ishihama Y,Nakayama KI |
| Journal | Nucleic acids research |
| Publication Date | 2021 Jul 21 |
| Abstract | |
| PMC | PMC8287933 |
| PMID | 34226921 |
| DOI |
| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) | ||
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| SRR14510024 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide |  |
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| SRR14510025 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide | |
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| SRR14510026 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | Lactimidomycin | |
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| SRR14510027 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | Lactimidomycin | |
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| SRR14510028 | PRJNA729461 | Homo sapiens | HEK293 | RNA-Seq | untreated | |
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| SRR14510029 | PRJNA729461 | Homo sapiens | HEK293 | RNA-Seq | untreated | |
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| SRR14510032 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510033 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510036 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510037 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510040 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510041 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510044 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510045 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510048 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510049 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510052 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510053 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510056 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510057 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510060 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510061 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510064 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510065 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510068 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510069 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510072 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510073 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510076 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510077 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510080 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510081 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | |
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| SRR14510084 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510085 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510086 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510087 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510088 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| SRR14510089 | PRJNA729461 | Homo sapiens | HEK293 | Ribo-Seq | untreated | |
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| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) |
ⓘ For more Information on the columns shown here see: About