Chen et al. 2021 (PRJNA731067)

General Details

Title Adaptation to chronic ER stress enforces pancreatic beta-cell plasticity
Organism
Number of Samples 9
Release Date 2021/05/19 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP320479
ENA SRP320479
GEO
BioProject PRJNA731067

Publication

Title
Authors Chen CW,Guan BJ,Alzahrani MR,Gao Z,Gao L,Bracey S,Wu J,Mbow CA,Jobava R,Haataja L,Zalavadia AH,Schaffer AE,Lee H,LaFramboise T,Bederman I,Arvan P,Mathews CE,Gerling IC,Kaestner KH,Tirosh B,Engin F,Hatzoglou M
Journal Nature communications
Publication Date 2022 Aug 8
Abstract Pancreatic β-cells are prone to endoplasmic reticulum (ER) stress due to their role in insulin secretion. They require sustainable and efficient adaptive stress responses to cope with this stress. Whether episodes of chronic stress directly compromise β-cell identity is unknown. We show here under reversible, chronic stress conditions β-cells undergo transcriptional and translational reprogramming associated with impaired expression of regulators of β-cell function and identity. Upon recovery from stress, β-cells regain their identity and function, indicating a high degree of adaptive plasticity. Remarkably, while β-cells show resilience to episodic ER stress, when episodes exceed a threshold, β-cell identity is gradually lost. Single cell RNA-sequencing analysis of islets from type 1 diabetes patients indicates severe deregulation of the chronic stress-adaptation program and reveals novel biomarkers of diabetes progression. Our results suggest β-cell adaptive exhaustion contributes to diabetes pathogenesis. © 2022. The Author(s).
PMC PMC9360004
PMID 35941159
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR14585398 PRJNA731067 Mus musculus Insulinoma MIN6 cell Ribo-Seq
SRR14585400 PRJNA731067 Mus musculus Insulinoma MIN6 cell Ribo-Seq
SRR14585402 PRJNA731067 Mus musculus Insulinoma MIN6 cell Ribo-Seq
SRR14585404 PRJNA731067 Mus musculus Insulinoma MIN6 cell Ribo-Seq
SRR14585406 PRJNA731067 Mus musculus Insulinoma MIN6 cell Ribo-Seq
SRR14585408 PRJNA731067 Mus musculus Insulinoma MIN6 cell Ribo-Seq
SRR14585410 PRJNA731067 Mus musculus Insulinoma MIN6 cell Ribo-Seq
SRR14585412 PRJNA731067 Mus musculus Insulinoma MIN6 cell Ribo-Seq
SRR14585414 PRJNA731067 Mus musculus Insulinoma MIN6 cell Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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