Sun et al. 2021 (PRJNA753487)

General Details

Title An oncomicropeptide Regulates translation in leukemia
Organism
Number of Samples 4
Release Date 2021/08/10 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP331914
ENA SRP331914
GEO GSE181795
BioProject PRJNA753487

Publication

Title
Authors Sun L,Wang W,Han C,Huang W,Sun Y,Fang K,Zeng Z,Yang Q,Pan Q,Chen T,Luo X,Chen Y
Journal Molecular cell
Publication Date 2021 Nov 4
Abstract Initiation is the rate-limiting step in translation, and its dysregulation is vital for carcinogenesis, including hematopoietic malignancy. Thus, discovery of novel translation initiation regulators may provide promising therapeutic targets. Here, combining Ribo-seq, mass spectrometry, and RNA-seq datasets, we discovered an oncomicropeptide, APPLE (a peptide located in ER), encoded by a non-coding RNA transcript in acute myeloid leukemia (AML). APPLE is overexpressed in various subtypes of AML and confers a poor prognosis. The micropeptide is enriched in ribosomes and regulates the initiation step to enhance translation and to maintain high rates of oncoprotein synthesis. Mechanically, APPLE promotes PABPC1-eIF4G interaction and facilitates mRNA circularization and eIF4F initiation complex assembly to support a specific pro-cancer translation program. Targeting APPLE exhibited broad anti-cancer effects in vitro and in vivo. This study not only reports a previously unknown function of micropeptides but also provides new opportunities for targeting the translation machinery in cancer cells. Copyright © 2021 Elsevier Inc. All rights reserved.
PMC
PMID 34555354
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR15404514 PRJNA753487 Homo sapiens Molm13 Ribo-Seq
SRR15404515 PRJNA753487 Homo sapiens Molm13 Ribo-Seq
SRR15404516 PRJNA753487 Homo sapiens Molm13 Ribo-Seq
SRR15404517 PRJNA753487 Homo sapiens Molm13 Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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