Sun et al. 2021 (PRJNA753487)

General Details

Title An oncomicropeptide Regulates translation in leukemia
Organism
Number of Samples 4
Release Date 2021/08/10 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP331914
ENA SRP331914
GEO
BioProject PRJNA753487

Publication

Title
Authors Sun L,Wang W,Han C,Huang W,Sun Y,Fang K,Zeng Z,Yang Q,Pan Q,Chen T,Luo X,Chen Y
Journal Molecular cell
Publication Date 2021 Nov 4
Abstract Initiation is the rate-limiting step in translation, and its dysregulation is vital for carcinogenesis, including hematopoietic malignancy. Thus, discovery of novel translation initiation regulators may provide promising therapeutic targets. Here, combining Ribo-seq, mass spectrometry, and RNA-seq datasets, we discovered an oncomicropeptide, APPLE (a peptide located in ER), encoded by a non-coding RNA transcript in acute myeloid leukemia (AML). APPLE is overexpressed in various subtypes of AML and confers a poor prognosis. The micropeptide is enriched in ribosomes and regulates the initiation step to enhance translation and to maintain high rates of oncoprotein synthesis. Mechanically, APPLE promotes PABPC1-eIF4G interaction and facilitates mRNA circularization and eIF4F initiation complex assembly to support a specific pro-cancer translation program. Targeting APPLE exhibited broad anti-cancer effects in vitro and in vivo. This study not only reports a previously unknown function of micropeptides but also provides new opportunities for targeting the translation machinery in cancer cells. Copyright © 2021 Elsevier Inc. All rights reserved.
PMC
PMID 34555354
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR15404514 PRJNA753487 Homo sapiens Molm13 Ribo-Seq
SRR15404515 PRJNA753487 Homo sapiens Molm13 Ribo-Seq
SRR15404516 PRJNA753487 Homo sapiens Molm13 Ribo-Seq
SRR15404517 PRJNA753487 Homo sapiens Molm13 Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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