Palomar-Siles et al. 2022 (PRJNA806946)

General Details

Title 5-Fluorouridine restores functional full-length p53 in TP53 nonsense mutant human tumor cells (Ribo-Seq)
Organism
Number of Samples 24
Release Date 2022/02/14 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP359785
ENA SRP359785
GEO GSE196709
BioProject PRJNA806946

Publication

Title
Authors Palomar-Siles M, Heldin A, Zhang M, Strandgren C, Yurevych V, van Dinter JT, Engels SAG, Hofman DA, Öhlin S, Meineke B, Bykov VJN, van Heesch S, Wiman KG
Journal Cell death & disease
Publication Date 2022 Nov 25
Abstract TP53 nonsense mutations in cancer produce truncated inactive p53 protein. We show that 5-FU metabolite 5-Fluorouridine (FUr) induces full-length p53 in human tumor cells carrying R213X nonsense mutant TP53. Ribosome profiling visualized translational readthrough at the R213X premature stop codon and demonstrated that FUr-induced readthrough is less permissive for canonical stop codon readthrough compared to aminoglycoside G418. FUr is incorporated into mRNA and can potentially base-pair with guanine, allowing insertion of Arg tRNA at the TP53 R213X UGA premature stop codon and translation of full-length wild-type p53. We confirmed that full-length p53 rescued by FUr triggers tumor cell death by apoptosis. FUr also restored full-length p53 in TP53 R213X mutant human tumor xenografts in vivo. Thus, we demonstrate a novel strategy for therapeutic rescue of nonsense mutant TP53 and suggest that FUr should be explored for treatment of patients with TP53 nonsense mutant tumors. © 2022. The Author(s).
PMC PMC9700717
PMID 36433934
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR18017759 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017758 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017757 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017756 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017755 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017754 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017753 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017752 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017751 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017750 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017749 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017748 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017747 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017746 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017745 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017744 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017743 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017742 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017741 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017740 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017739 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017738 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017737 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
SRR18017736 PRJNA806946 Homo sapiens H1299 Ribo-Seq 0.0
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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