Palomar-Siles et al. 2022 (PRJNA806946)

General Details

Title 5-Fluorouridine restores functional full-length p53 in TP53 nonsense mutant human tumor cells (Ribo-Seq)
Organism
Number of Samples 24
Release Date 2022/02/14 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP359785
ENA SRP359785
GEO
BioProject PRJNA806946

Publication

Title
Authors Palomar-Siles M,Heldin A,Zhang M,Strandgren C,Yurevych V,van Dinter JT,Engels SAG,Hofman DA,Öhlin S,Meineke B,Bykov VJN,van Heesch S,Wiman KG
Journal Cell death & disease
Publication Date 2022 Nov 25
Abstract TP53 nonsense mutations in cancer produce truncated inactive p53 protein. We show that 5-FU metabolite 5-Fluorouridine (FUr) induces full-length p53 in human tumor cells carrying R213X nonsense mutant TP53. Ribosome profiling visualized translational readthrough at the R213X premature stop codon and demonstrated that FUr-induced readthrough is less permissive for canonical stop codon readthrough compared to aminoglycoside G418. FUr is incorporated into mRNA and can potentially base-pair with guanine, allowing insertion of Arg tRNA at the TP53 R213X UGA premature stop codon and translation of full-length wild-type p53. We confirmed that full-length p53 rescued by FUr triggers tumor cell death by apoptosis. FUr also restored full-length p53 in TP53 R213X mutant human tumor xenografts in vivo. Thus, we demonstrate a novel strategy for therapeutic rescue of nonsense mutant TP53 and suggest that FUr should be explored for treatment of patients with TP53 nonsense mutant tumors. © 2022. The Author(s).
PMC PMC9700717
PMID 36433934
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR18017759 PRJNA806946 Homo sapiens H1299 Ribo-Seq untreated
SRR18017758 PRJNA806946 Homo sapiens H1299 Ribo-Seq untreated
SRR18017757 PRJNA806946 Homo sapiens H1299 Ribo-Seq untreated
SRR18017756 PRJNA806946 Homo sapiens H1299 Ribo-Seq untreated
SRR18017755 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017754 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017753 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017752 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017751 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017750 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017749 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017748 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017747 PRJNA806946 Homo sapiens H1299 Ribo-Seq untreated
SRR18017746 PRJNA806946 Homo sapiens H1299 Ribo-Seq untreated
SRR18017745 PRJNA806946 Homo sapiens H1299 Ribo-Seq untreated
SRR18017744 PRJNA806946 Homo sapiens H1299 Ribo-Seq untreated
SRR18017743 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017742 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017741 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017740 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017739 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017738 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017737 PRJNA806946 Homo sapiens H1299 Ribo-Seq
SRR18017736 PRJNA806946 Homo sapiens H1299 Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About