Palomar-Siles et al. 2022 (PRJNA806946)
General Details
Title | 5-Fluorouridine restores functional full-length p53 in TP53 nonsense mutant human tumor cells (Ribo-Seq) |
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Organism | |
Number of Samples | 24 |
Release Date | 2022/02/14 00:00 |
Sequencing Types | |
Protocol Details |
Study Links
GWIPS-viz | Trips-Viz |
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Repository Details
SRA | SRP359785 |
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ENA | SRP359785 |
GEO | GSE196709 |
BioProject | PRJNA806946 |
Publication
Title | |
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Authors | Palomar-Siles M,Heldin A,Zhang M,Strandgren C,Yurevych V,van Dinter JT,Engels SAG,Hofman DA,Öhlin S,Meineke B,Bykov VJN,van Heesch S,Wiman KG |
Journal | Cell death & disease |
Publication Date | 2022 Nov 25 |
Abstract | TP53 nonsense mutations in cancer produce truncated inactive p53 protein. We show that 5-FU metabolite 5-Fluorouridine (FUr) induces full-length p53 in human tumor cells carrying R213X nonsense mutant TP53. Ribosome profiling visualized translational readthrough at the R213X premature stop codon and demonstrated that FUr-induced readthrough is less permissive for canonical stop codon readthrough compared to aminoglycoside G418. FUr is incorporated into mRNA and can potentially base-pair with guanine, allowing insertion of Arg tRNA at the TP53 R213X UGA premature stop codon and translation of full-length wild-type p53. We confirmed that full-length p53 rescued by FUr triggers tumor cell death by apoptosis. FUr also restored full-length p53 in TP53 R213X mutant human tumor xenografts in vivo. Thus, we demonstrate a novel strategy for therapeutic rescue of nonsense mutant TP53 and suggest that FUr should be explored for treatment of patients with TP53 nonsense mutant tumors. © 2022. The Author(s). |
PMC | PMC9700717 |
PMID | 36433934 |
DOI |
Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) | ||
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SRR18017759 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | untreated | ||||||||
SRR18017758 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | untreated | ||||||||
SRR18017757 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | untreated | ||||||||
SRR18017756 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | untreated | ||||||||
SRR18017755 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017754 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017753 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017752 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017751 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017750 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017749 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017748 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017747 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | untreated | ||||||||
SRR18017746 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | untreated | ||||||||
SRR18017745 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | untreated | ||||||||
SRR18017744 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | untreated | ||||||||
SRR18017743 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017742 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017741 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017740 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017739 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017738 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017737 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
SRR18017736 | PRJNA806946 | Homo sapiens | H1299 | Ribo-Seq | |||||||||
Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) |
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