Lee et al. 2023 (PRJNA847982)

General Details

Title Study the global mRNA translation changes between SKBR cells overexpressing VIRMA and eGFP control
Organism
Number of Samples 6
Release Date 2022/06/10 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP379598
ENA SRP379598
GEO GSE205873
BioProject PRJNA847982

Publication

Title
Authors Lee Q,Song R,Phan DAV,Pinello N,Tieng J,Su A,Halstead JM,Wong ACH,van Geldermalsen M,Lee BS,Rong B,Cook KM,Larance M,Liu R,Lan F,Tiffen JC,Wong JJ
Journal Cellular and molecular life sciences : CMLS
Publication Date 2023 May 19
Abstract Virilizer-like m 6 A methyltransferase-associated protein (VIRMA) maintains the stability of the m 6 A writer complex. Although VIRMA is critical for RNA m 6 A deposition, the impact of aberrant VIRMA expression in human diseases remains unclear. We show that VIRMA is amplified and overexpressed in 15-20% of breast cancers. Of the two known VIRMA isoforms, the nuclear-enriched full-length but not the cytoplasmic-localised N-terminal VIRMA promotes m 6 A-dependent breast tumourigenesis in vitro and in vivo. Mechanistically, we reveal that VIRMA overexpression upregulates the m 6 A-modified long non-coding RNA, NEAT1, which contributes to breast cancer cell growth. We also show that VIRMA overexpression enriches m 6 A on transcripts that regulate the unfolded protein response (UPR) pathway but does not promote their translation to activate the UPR under optimal growth conditions. Under stressful conditions that are often present in tumour microenvironments, VIRMA-overexpressing cells display enhanced UPR and increased susceptibility to death. Our study identifies oncogenic VIRMA overexpression as a vulnerability that may be exploited for cancer therapy. © 2023. The Author(s).
PMC PMC10198946
PMID 37208522
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR19623115 PRJNA847982 Homo sapiens SKBR3Breast cancer Ribo-Seq
SRR19623114 PRJNA847982 Homo sapiens SKBR3Breast cancer Ribo-Seq
SRR19623113 PRJNA847982 Homo sapiens SKBR3Breast cancer Ribo-Seq
SRR19623112 PRJNA847982 Homo sapiens SKBR3Breast cancer Ribo-Seq
SRR19623111 PRJNA847982 Homo sapiens SKBR3Breast cancer Ribo-Seq
SRR19623110 PRJNA847982 Homo sapiens SKBR3Breast cancer Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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