Yamashita et al. 2023 (PRJNA862900)

General Details

Title mRNA expression and translation regulated by the prion-like domain of Ilf3 in the mouse amygdala under chronic stress
Organism
Number of Samples 8
Release Date 2022/07/27 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP388405
ENA SRP388405
GEO
BioProject PRJNA862900

Publication

Title
Authors Yamashita A,Shichino Y,Fujii K,Koshidaka Y,Adachi M,Sasagawa E,Mito M,Nakagawa S,Iwasaki S,Takao K,Shiina N
Journal iScience
Publication Date 2023 Mar 17
Abstract The prion-like domain (PrLD) is a class of intrinsically disordered regions. Although its propensity to form condensates has been studied in the context of neurodegenerative diseases, the physiological role of PrLD remains unclear. Here, we investigated the role of PrLD in the RNA-binding protein NFAR2, generated by a splicing variant of the Ilf3 gene. Removal of the PrLD in mice did not impair the function of NFAR2 required for survival, but did affect the responses to chronic water immersion and restraint stress (WIRS). The PrLD was required for WIRS-sensitive nuclear localization of NFAR2 and WIRS-induced changes in mRNA expression and translation in the amygdala, a fear-related brain region. Consistently, the PrLD conferred resistance to WIRS in fear-associated memory formation. Our study provides insights into the PrLD-dependent role of NFAR2 for chronic stress adaptation in the brain. © 2023 The Author(s).
PMC PMC9982275
PMID 36876121
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR20672881 PRJNA862900 Mus musculus Ribo-Seq
SRR20672880 PRJNA862900 Mus musculus Ribo-Seq
SRR20672879 PRJNA862900 Mus musculus Ribo-Seq
SRR20672878 PRJNA862900 Mus musculus Ribo-Seq
SRR20672877 PRJNA862900 Mus musculus Ribo-Seq
SRR20672860 PRJNA862900 Mus musculus Ribo-Seq
SRR20672859 PRJNA862900 Mus musculus Ribo-Seq
SRR20672858 PRJNA862900 Mus musculus Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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