0.0 et al. 2023 (PRJNA913269)

General Details

Title Human Hematopoietic Stem Cell Vulnerability to Ferroptosis [Ribosome profiling]
Organism
Number of Samples 6
Release Date 2022/12/16 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP413563
ENA SRP413563
GEO GSE221165
BioProject PRJNA913269

Publication

Title
Authors Zhao J, Jia Y, Mahmut D, Deik AA, Jeanfavre S, Clish CB, Sankaran VG
Journal Cell
Publication Date 2023 Feb 16
Abstract Hematopoietic stem cells (HSCs) have a number of unique physiologic adaptations that enable lifelong maintenance of blood cell production, including a highly regulated rate of protein synthesis. Yet, the precise vulnerabilities that arise from such adaptations have not been fully characterized. Here, inspired by a bone marrow failure disorder due to the loss of the histone deubiquitinase MYSM1, characterized by selectively disadvantaged HSCs, we show how reduced protein synthesis in HSCs results in increased ferroptosis. HSC maintenance can be fully rescued by blocking ferroptosis, despite no alteration in protein synthesis rates. Importantly, this selective vulnerability to ferroptosis not only underlies HSC loss in MYSM1 deficiency but also characterizes a broader liability of human HSCs. Increasing protein synthesis rates via MYSM1 overexpression makes HSCs less susceptible to ferroptosis, more broadly illustrating the selective vulnerabilities that arise in somatic stem cell populations as a result of physiologic adaptations. Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.
PMC PMC9978939
PMID 36803603
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR22767490 PRJNA913269 Homo sapiens NA_HSPC Ribo-Seq 0.0
SRR22767489 PRJNA913269 Homo sapiens NA_HSPC Ribo-Seq 0.0
SRR22767488 PRJNA913269 Homo sapiens NA_HSPC Ribo-Seq 0.0
SRR22767487 PRJNA913269 Homo sapiens NA_HSPC Ribo-Seq 0.0
SRR22767486 PRJNA913269 Homo sapiens NA_HSPC Ribo-Seq 0.0
SRR22767485 PRJNA913269 Homo sapiens NA_HSPC Ribo-Seq 0.0
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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