Kim et al. 2021 (PRJNA705181)
General Details
| Title | Ribosome profiling experiments of LRRK2 mouse models |
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| Organism | |
| Number of Samples | 15 |
| Release Date | 2021/02/26 00:00 |
| Sequencing Types | |
| Protocol Details |
Study Links
| GWIPS-viz | Trips-Viz |
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Repository Details
| SRA | SRP308389 |
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| ENA | SRP308389 |
| GEO | GSE167704 |
| BioProject | PRJNA705181 |
Publication
| Title | |
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| Authors | Kim JW, Yin X, Martin I, Xiong Y, Eacker SM, Ingolia NT, Dawson TM, Dawson VL |
| Journal | eNeuro |
| Publication Date | 2021 Nov-Dec |
| Abstract | The G2019S mutation in leucine-rich repeat kinase 2 (LRRK2) causes familial Parkinson's disease (PD) and is also found in a subset of idiopathic cases. Prior studies in Drosophila and human induced pluripotent stem cell (iPSC)-derived dopamine neurons uncovered a pronounced effect of G2019S LRRK2 on mRNA translation. It was previously reported that G2019S LRRK2 promotes translation of mRNAs with complex 5' untranslated region (UTR) secondary structure, resulting in increased expression of calcium channels and dysregulated calcium homeostasis in human dopamine neurons. Here, we show that dysregulated translation occurs in the brains of mammalian LRRK2 models in vivo Through ribosome profiling studies of global translation, we observe that mRNAs with complex 5'UTR structure are also preferentially translated in the G2019S LRRK2-expressing mouse brain. Reporter assays suggest that this 5'UTR preference is independent of translation initiation factors. Conversely, translation of mRNAs with complex 5'UTR secondary structure is downregulated in LRRK2 knock-out (KO) mouse brain, indicating a robust link between LRRK2 kinase activity and translation of mRNA with complex 5'UTR structure. Further, substantia nigra pars compacta (SNpc) dopamine neurons in the G2019S LRRK2-expressing brain exhibit increased calcium influx, which is consistent with the previous report from human dopamine neurons. These results collectively suggest that LRRK2 plays a mechanistic role in translational regulation, and the G2019S mutation in LRRK2 causes translational defects leading to calcium dysregulation in the mammalian brain. Copyright © 2021 Kim et al. |
| PMC | PMC8638676 |
| PMID | 34759048 |
| DOI |
| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) | ||
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| SRR13794627 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen |  |
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| SRR13794628 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794629 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794630 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794631 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794632 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794633 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794641 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794642 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794643 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794644 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794649 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794650 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794651 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| SRR13794652 | PRJNA705181 | Mus musculus | 0.0 | Ribo-Seq | Frozen | |
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| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) |
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