Ishimura et al. 2014 (PRJNA242520)

General Details

Title Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration
Organism
Number of Samples 8
Release Date 2014/03/24 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP040502
ENA SRP040502
GEO
BioProject PRJNA242520

Publication

Title
Authors Ishimura R,Nagy G,Dotu I,Zhou H,Yang XL,Schimmel P,Senju S,Nishimura Y,Chuang JH,Ackerman SL
Journal Science (New York, N.Y.)
Publication Date 2014 Jul 25
Abstract In higher eukaryotes, transfer RNAs (tRNAs) with the same anticodon are encoded by multiple nuclear genes, and little is known about how mutations in these genes affect translation and cellular homeostasis. Similarly, the surveillance systems that respond to such defects in higher eukaryotes are not clear. Here, we discover that loss of GTPBP2, a novel binding partner of the ribosome recycling protein Pelota, in mice with a mutation in a tRNA gene that is specifically expressed in the central nervous system causes ribosome stalling and widespread neurodegeneration. Our results not only define GTPBP2 as a ribosome rescue factor but also unmask the disease potential of mutations in nuclear-encoded tRNA genes. Copyright © 2014, American Association for the Advancement of Science.
PMC PMC4281038
PMID 25061210
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR1202290 PRJNA242520 Mus musculus Ribo-Seq
SRR1202291 PRJNA242520 Mus musculus Ribo-Seq
SRR1202292 PRJNA242520 Mus musculus Ribo-Seq
SRR1202293 PRJNA242520 Mus musculus Ribo-Seq
SRR1202294 PRJNA242520 Mus musculus Ribo-Seq
SRR1202295 PRJNA242520 Mus musculus Ribo-Seq
SRR1202296 PRJNA242520 Mus musculus Ribo-Seq
SRR1202297 PRJNA242520 Mus musculus Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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