Liu et al. 2020 (PRJNA680923)

General Details

Title OXPHOS deficiency activates global adaptation pathways to maintain mitochondrial membrane potential
Organism
Number of Samples 8
Release Date 2020/11/26 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP294317
ENA SRP294317
GEO GSE162197
BioProject PRJNA680923

Publication

Title
Authors Liu S,Liu S,He B,Li L,Li L,Wang J,Cai T,Chen S,Jiang H
Journal EMBO reports
Publication Date 2021 Apr 7
Abstract Reduction of mitochondrial membrane potential (Δψ m ) is a hallmark of mitochondrial dysfunction. It activates adaptive responses in organisms from yeast to human to rewire metabolism, remove depolarized mitochondria, and degrade unimported precursor proteins. It remains unclear how cells maintain Δψ m , which is critical for maintaining iron-sulfur cluster (ISC) synthesis, an indispensable function of mitochondria. Here, we show that yeast oxidative phosphorylation mutants deficient in complex III, IV, V, and mtDNA, respectively, exhibit activated stress responses and progressive reduction of Δψ m . Extensive omics analyses of these mutants show that these mutants progressively activate adaptive responses, including transcriptional downregulation of ATP synthase inhibitor Inh1 and OXPHOS subunits, Puf3-mediated upregulation of import receptor Mia40 and global mitochondrial biogenesis, Snf1/AMPK-mediated upregulation of glycolysis and repression of ribosome biogenesis, and transcriptional upregulation of cytoplasmic chaperones. These adaptations disinhibit mitochondrial ATP hydrolysis, remodel mitochondrial proteome, and optimize ATP supply to mitochondria to convergently maintain Δψ m , ISC biosynthesis, and cell proliferation. © 2021 The Authors.
PMC PMC8025004
PMID 33655635
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR13150122 PRJNA680923 Saccharomyces cerevisiae Ribo-Seq Cycloheximide
SRR13150123 PRJNA680923 Saccharomyces cerevisiae Ribo-Seq Cycloheximide
SRR13150124 PRJNA680923 Saccharomyces cerevisiae Ribo-Seq Cycloheximide
SRR13150125 PRJNA680923 Saccharomyces cerevisiae Ribo-Seq Cycloheximide
SRR13150126 PRJNA680923 Saccharomyces cerevisiae Ribo-Seq Cycloheximide
SRR13150127 PRJNA680923 Saccharomyces cerevisiae Ribo-Seq Cycloheximide
SRR13150128 PRJNA680923 Saccharomyces cerevisiae Ribo-Seq Cycloheximide
SRR13150129 PRJNA680923 Saccharomyces cerevisiae Ribo-Seq Cycloheximide
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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