Liu et al. 2020 (PRJNA680923)
General Details
Title | OXPHOS deficiency activates global adaptation pathways to maintain mitochondrial membrane potential |
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Organism | |
Number of Samples | 8 |
Release Date | 2020/11/26 00:00 |
Sequencing Types | |
Protocol Details |
Study Links
GWIPS-viz | Trips-Viz |
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Repository Details
SRA | SRP294317 |
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ENA | SRP294317 |
GEO | GSE162197 |
BioProject | PRJNA680923 |
Publication
Title | |
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Authors | Liu S,Liu S,He B,Li L,Li L,Wang J,Cai T,Chen S,Jiang H |
Journal | EMBO reports |
Publication Date | 2021 Apr 7 |
Abstract | Reduction of mitochondrial membrane potential (Δψ m ) is a hallmark of mitochondrial dysfunction. It activates adaptive responses in organisms from yeast to human to rewire metabolism, remove depolarized mitochondria, and degrade unimported precursor proteins. It remains unclear how cells maintain Δψ m , which is critical for maintaining iron-sulfur cluster (ISC) synthesis, an indispensable function of mitochondria. Here, we show that yeast oxidative phosphorylation mutants deficient in complex III, IV, V, and mtDNA, respectively, exhibit activated stress responses and progressive reduction of Δψ m . Extensive omics analyses of these mutants show that these mutants progressively activate adaptive responses, including transcriptional downregulation of ATP synthase inhibitor Inh1 and OXPHOS subunits, Puf3-mediated upregulation of import receptor Mia40 and global mitochondrial biogenesis, Snf1/AMPK-mediated upregulation of glycolysis and repression of ribosome biogenesis, and transcriptional upregulation of cytoplasmic chaperones. These adaptations disinhibit mitochondrial ATP hydrolysis, remodel mitochondrial proteome, and optimize ATP supply to mitochondria to convergently maintain Δψ m , ISC biosynthesis, and cell proliferation. © 2021 The Authors. |
PMC | PMC8025004 |
PMID | 33655635 |
DOI |
Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) | ||
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SRR13150122 | PRJNA680923 | Saccharomyces cerevisiae | Ribo-Seq | Cycloheximide | |||||||||
SRR13150123 | PRJNA680923 | Saccharomyces cerevisiae | Ribo-Seq | Cycloheximide | |||||||||
SRR13150124 | PRJNA680923 | Saccharomyces cerevisiae | Ribo-Seq | Cycloheximide | |||||||||
SRR13150125 | PRJNA680923 | Saccharomyces cerevisiae | Ribo-Seq | Cycloheximide | |||||||||
SRR13150126 | PRJNA680923 | Saccharomyces cerevisiae | Ribo-Seq | Cycloheximide | |||||||||
SRR13150127 | PRJNA680923 | Saccharomyces cerevisiae | Ribo-Seq | Cycloheximide | |||||||||
SRR13150128 | PRJNA680923 | Saccharomyces cerevisiae | Ribo-Seq | Cycloheximide | |||||||||
SRR13150129 | PRJNA680923 | Saccharomyces cerevisiae | Ribo-Seq | Cycloheximide | |||||||||
Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) |
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