Zinshteyn et al. 2020 (PRJNA613736)
General Details
| Title | Nuclease-mediated depletion biases in ribosome footprint profiling libraries |
|---|---|
| Organism | |
| Number of Samples | 26 |
| Release Date | 2020/03/20 00:00 |
| Sequencing Types | |
| Protocol Details |
Study Links
| GWIPS-viz | Trips-Viz |
|---|---|
Repository Details
| SRA | SRP253534 |
|---|---|
| ENA | SRP253534 |
| GEO | GSE147324 |
| BioProject | PRJNA613736 |
Publication
| Title | |
|---|---|
| Authors | Zinshteyn B,Wangen JR,Hua B,Green R |
| Journal | RNA (New York, N.Y.) |
| Publication Date | 2020 Oct |
| Abstract | |
| PMC | PMC7491325 |
| PMID | 32503920 |
| DOI |
| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR11362448 | PRJNA613736 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide |  |
 |
 |
 |
|
|
||
| SRR11362449 | PRJNA613736 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362450 | PRJNA613736 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362451 | PRJNA613736 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362452 | PRJNA613736 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362453 | PRJNA613736 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362454 | PRJNA613736 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362455 | PRJNA613736 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362456 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362457 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362458 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362459 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362460 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362461 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362462 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362463 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362464 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362465 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362466 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362467 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362468 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362469 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362470 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362471 | PRJNA613736 | Homo sapiens | K562 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362472 | PRJNA613736 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| SRR11362473 | PRJNA613736 | Homo sapiens | HEK293 | Ribo-Seq | Cycloheximide | |
|
|
|
|
|
||
| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) |
ⓘ For more Information on the columns shown here see: About